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How to minimize systematic error?

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Hi, 

I need advice in minimising error in calculating the area of the holes present in a spouting cylinder. If I take into account the error, it reaches 20%, which is really high. Should I just ignore this since it should not effect the overall result. But then again, to find the velocity of the fluid, I am dividing the volumetric flow rate by the area of the hole, so what should i do?

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